PP_0235 protein (Pseudomonas putida KT2440) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

PP_0235

Peroxidase. (212 aa)

Predicted Functional Partners:

cysW

0.831

hflX

0.822

PP_5172

0.786

ahpF

0.759

ssuD

0.719

PP_2700

0.710

ssuE

0.708

PP_0241

0.704

tauA

0.695

sodB

0.679

Your Current Organism:

Pseudomonas putida KT2440

NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PP_0235	PP_0241	PP_0235	PP_0241	Peroxidase.	Transporter.	0.704
PP_0235	PP_2700	PP_0235	PP_2700	Peroxidase.	AhpC/TSA family protein; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.	0.710
PP_0235	PP_5172	PP_0235	PP_5172	Peroxidase.	Hypothetical protein; No homology to any previously reported sequences.	0.786
PP_0235	ahpF	PP_0235	PP_2440	Peroxidase.	Alkyl hydroperoxide reductase subunit F; Serves to protect the cell against DNA damage by alkyl hydroperoxides. It can use either NADH or NADPH as electron donor for direct reduction of redox dyes or of alkyl hydroperoxides when combined with the AhpC protein (By similarity); Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family.	0.759
PP_0235	cysW	PP_0235	PP_5169	Peroxidase.	Sulfate ABC transporter, inner membrane subunit CysW; Function of homologous gene experimentally demonstrated in an other organism; transporter.	0.831
PP_0235	hflX	PP_0235	PP_4893	Peroxidase.	GTPase HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.	0.822
PP_0235	sodB	PP_0235	PP_0915	Peroxidase.	Superoxide dismutase (Fe); Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems; Belongs to the iron/manganese superoxide dismutase family.	0.679
PP_0235	ssuD	PP_0235	PP_0238	Peroxidase.	Alkanesulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.	0.719
PP_0235	ssuE	PP_0235	PP_0236	Peroxidase.	NAD(P)H-dependent FMN reductase subunit; Probably forms a two-component reduced flavin mononucleotide- dependent monooxygenase by binding to SsuD. Required for growth on aliphatic sulfonates or methionine but not arylsulfonates (By similarity); Belongs to the SsuE family.	0.708
PP_0235	tauA	PP_0235	PP_0233	Peroxidase.	Taurine ABC transporter periplasmic binding subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Centralintermediarymetabolism : Sulfur metabolism.	0.695
PP_0241	PP_0235	PP_0241	PP_0235	Transporter.	Peroxidase.	0.704
PP_0241	ssuD	PP_0241	PP_0238	Transporter.	Alkanesulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.	0.914
PP_0241	ssuE	PP_0241	PP_0236	Transporter.	NAD(P)H-dependent FMN reductase subunit; Probably forms a two-component reduced flavin mononucleotide- dependent monooxygenase by binding to SsuD. Required for growth on aliphatic sulfonates or methionine but not arylsulfonates (By similarity); Belongs to the SsuE family.	0.758
PP_2700	PP_0235	PP_2700	PP_0235	AhpC/TSA family protein; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.	Peroxidase.	0.710
PP_5172	PP_0235	PP_5172	PP_0235	Hypothetical protein; No homology to any previously reported sequences.	Peroxidase.	0.786
PP_5172	cysW	PP_5172	PP_5169	Hypothetical protein; No homology to any previously reported sequences.	Sulfate ABC transporter, inner membrane subunit CysW; Function of homologous gene experimentally demonstrated in an other organism; transporter.	0.770
PP_5172	ssuE	PP_5172	PP_0236	Hypothetical protein; No homology to any previously reported sequences.	NAD(P)H-dependent FMN reductase subunit; Probably forms a two-component reduced flavin mononucleotide- dependent monooxygenase by binding to SsuD. Required for growth on aliphatic sulfonates or methionine but not arylsulfonates (By similarity); Belongs to the SsuE family.	0.407
ahpF	PP_0235	PP_2440	PP_0235	Alkyl hydroperoxide reductase subunit F; Serves to protect the cell against DNA damage by alkyl hydroperoxides. It can use either NADH or NADPH as electron donor for direct reduction of redox dyes or of alkyl hydroperoxides when combined with the AhpC protein (By similarity); Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family.	Peroxidase.	0.759
ahpF	sodB	PP_2440	PP_0915	Alkyl hydroperoxide reductase subunit F; Serves to protect the cell against DNA damage by alkyl hydroperoxides. It can use either NADH or NADPH as electron donor for direct reduction of redox dyes or of alkyl hydroperoxides when combined with the AhpC protein (By similarity); Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family.	Superoxide dismutase (Fe); Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems; Belongs to the iron/manganese superoxide dismutase family.	0.853
cysW	PP_0235	PP_5169	PP_0235	Sulfate ABC transporter, inner membrane subunit CysW; Function of homologous gene experimentally demonstrated in an other organism; transporter.	Peroxidase.	0.831