Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
envZOsmolarity sensor protein EnvZ. (437 aa)    
Predicted Functional Partners:
ompR
Two-component system DNA-binding response transcriptional dual regulator; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transcription.
 
 0.999
PP_2758
Putative Ribose ABC transporter, periplasmic ribose-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
    
 
 0.786
aruR
Transcriptional regulatory protein AruR.
 
 
 0.776
PP_1651
Two-component response regulator; Function of strongly homologous gene; regulator; Regulatory functions.
 
 
 0.774
PP_4503
DNA-binding response regulator.
 
 
 0.771
PP_2397
EF hand domain protein.
   
  
 0.768
PP_3454
Putative transcriptional regulatory protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Regulatory functions.
 
 
 0.758
PP_2403
Chemotaxis protein CheY.
 
 
 0.752
PP_3484
Response regulator receiver protein.
  
   0.750
PP_0534
Putative Transcriptional regulator PfeR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.747
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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