STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygaURegulator of murein cross-linking; Function of homologous gene experimentally demonstrated in an other organism; regulator; Unknown function. (146 aa)    
Predicted Functional Partners:
trpS
Tryptophan--tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
  
   0.917
PP_3860
Phage FluMu protein gp47.
  
 
 0.890
gpW
Pyocin R2_PP, baseplate protein.
  
   0.880
PP_5081
Type IV pili biogenesis protein.
   
   0.877
PP_3046
Homologs of previously reported genes of unknown function.
  
 
 0.805
PP_3059
Putative tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
  
 
 0.805
gpD
Pyocin R2_PP, tail formation.
  
   0.777
PP_1519
Putative Lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.730
PP_1749
GNAT family acetyltransferase; Function experimentally demonstrated in the studied genus; enzyme; Central intermediary metabolism.
 
   
 0.716
PP_3138
VirK domain protein.
   
  
 0.702
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.