STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
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[Homology]
Score
PP_0280Amino acid ABC transporter, permease protein. (229 aa)    
Predicted Functional Partners:
aotP
Arginine/ornithine transport ATP-binding protein AotP.
 
 0.995
artJ
L-arginine ABC transporter - periplasmic binding subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Glutamate family.
 
 0.994
PP_0281
Amino acid ABC transporter, permease protein.
 
 
0.989
fliY
Periplasmic cystine-binding protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Serine family.
  
 0.977
argT
Lysine / arginine / ornithine ABC transporter - periplasmic binding protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Aspartate family.
  
 0.952
hisP
Histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Aspartate family.
  
 0.904
PP_5024
Amino acid ABC transporter, periplasmic amino acid-binding protein; Belongs to the bacterial solute-binding protein 3 family.
  
 0.874
PP_3593
Amino acid ABC transporter, periplasmic binding protein; Function experimentally demonstrated in the studied strain; transporter; Transportandbindingproteins : Amino acids, peptides and amines; Belongs to the bacterial solute-binding protein 3 family.
  
 0.867
sctC
Sulfur compound ABC transporter - ATP-binding subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins.
  
 0.859
PP_4425
Putative amino-acid ABC transporter ATP-binding protein y4tH; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 0.839
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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