Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
artJL-arginine ABC transporter - periplasmic binding subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Glutamate family. (250 aa)    
Predicted Functional Partners:
PP_0281
Amino acid ABC transporter, permease protein.
  0.996
PP_0280
Amino acid ABC transporter, permease protein.
 
 0.994
aotP
Arginine/ornithine transport ATP-binding protein AotP.
 
 
  0.989
sctS
Sulfur compound ABC transporter - permease subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins.
   0.978
PP_4426
Amino acid ABC transporter, permease protein.
   0.972
PP_0656
Putative Amino acid ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   0.965
PP_5023
Amino acid ABC transporter, permease protein.
   0.954
PP_4427
Amino acid ABC transporter, permease protein.
   0.949
hisP
Histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Aspartate family.
 
  
 0.949
gltK
Glutamate / aspartate ABC transporter - permease subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Aspartate family.
 
 0.947
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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