Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_0301betainyl-CoA thiolase; Function experimentally demonstrated in the studied genus; enzyme; Energymetabolism : Amino acids and amines. (156 aa)    
Predicted Functional Partners:
lcdH
L-carnitine dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
   
 0.998
PP_0303
Dehydrocarnitine cleavage enzyme; Function experimentally demonstrated in the studied genus; enzyme; Energymetabolism : Amino acids and amines.
 
  
 0.972
caiX
Carnitine uptake ABC transporter, periplasmic component; Function experimentally demonstrated in the studied genus; transporter; Energymetabolism : Amino acids and amines.
 
   
 0.875
PP_4218
Lipase/esterase family protein.
     
 0.777
cdhR
HTH-type transcriptional regulator CdhR; Function experimentally demonstrated in the studied genus; regulator; Energymetabolism : Amino acids and amines.
 
   
 0.724
PP_4552
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
 0.722
fadB
enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
  
  
 0.666
fatB
Ferric anguibactin-binding protein.
      
 0.634
PP_5609
Homologs of previously reported genes of unknown function.
  
     0.575
PP_3724
Putative Acyl-CoA synthetase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.484
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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