STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
caiXCarnitine uptake ABC transporter, periplasmic component; Function experimentally demonstrated in the studied genus; transporter; Energymetabolism : Amino acids and amines. (314 aa)    
Predicted Functional Partners:
PP_3559
Glycine betaine ABC transporter (permease); Function of strongly homologous gene; transporter; Transportandbindingproteins : Amino acids, peptides and amines.
 
 0.996
cbcW
Choline / betaine / carnitine ABC transporter - membrane subunit; Function experimentally demonstrated in the studied genus; transporter.
 
 0.989
opuA
Glycine betaine ABC transporter, ATPase/permease fusion protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transportandbindingproteins : Amino acids, peptides and amines.
 
 0.989
cbcV
Choline / betaine / carnitine ABC transporter - ATP binding subunit; Function experimentally demonstrated in the studied genus; transporter; Aminoacidbiosynthesis : Glutamate family.
 
 0.987
cdhR
HTH-type transcriptional regulator CdhR; Function experimentally demonstrated in the studied genus; regulator; Energymetabolism : Amino acids and amines.
 
   
 0.721
PP_0303
Dehydrocarnitine cleavage enzyme; Function experimentally demonstrated in the studied genus; enzyme; Energymetabolism : Amino acids and amines.
 
  
 0.711
PP_2775
Putative glycine betaine/L-proline ABC transporter, periplasmic component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transportandbindingproteins : Amino acids, peptides and amines.
  
  
  0.676
betX
Choline / betaine / carnitine ABC transporter - substrate binding protein BetX; Function experimentally demonstrated in the studied genus; transporter.
  
  
0.666
PP_0301
betainyl-CoA thiolase; Function experimentally demonstrated in the studied genus; enzyme; Energymetabolism : Amino acids and amines.
 
  
 0.632
lcdH
L-carnitine dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
   
 0.576
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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