Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_0349Putative Membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (370 aa)    
Predicted Functional Partners:
PP_3575
Outer membrane ferric siderophore receptor.
 
  
 0.897
PP_5443
Homologs of previously reported genes of unknown function.
  
    0.876
PP_0350
Outer membrane ferrichrome-iron receptor.
 
    0.820
PP_3084
Putative Outer membrane ferric siderophore receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
    0.768
PP_2590
Outer membrane ferric siderophore receptor.
 
   
 0.748
PP_0348
Homologs of previously reported genes of unknown function.
  
    0.585
PP_0352
RNA polymerase sigma-70 factor, ECF subfamily.
 
   
 0.529
PP_0267
Putative Outer membrane ferric siderophore receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.480
PP_2420
Outer membrane ferric siderophore receptor.
 
    0.479
PP_0160
Putative ferrioxamine receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
 
    0.463
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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