Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fdoHFormate dehydrogenase-O, beta subunit; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers. (316 aa)    
Predicted Functional Partners:
fdoG
Formate dehydrogenase-O major subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Aerobic.
 0.999
fdoI
Formate dehydrogenase-O, gamma subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Aerobic.
 
 0.999
fdhE
Formate dehydrogenase formation protein; Necessary for formate dehydrogenase activity. Belongs to the FdhE family.
  
 0.986
PP_2185
Putative Formate dehydrogenase, alpha subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.979
PP_1080
Putative oxidoreductase molybdopterin-binding; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.953
selA
Selenocysteine synthase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.918
PP_2183
Putative Formate dehydrogenase, gamma subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.914
selB
selenocysteyl-tRNA-specific translation elongation factor; Function of homologous gene experimentally demonstrated in an other organism; factor; Proteinsynthesis : Translation factors.
 
  
 0.913
PP_2184
Putative Formate dehydrogenase, beta subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.912
fdhA
Formaldehyde dehydrogenase; Function experimentally demonstrated in the studied species; enzyme; Energy metabolism.
   
 
 0.904
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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