STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_0541Acetyltransferase, GNAT family. (152 aa)    
Predicted Functional Partners:
PP_5345
Acetyltransferase, GNAT family.
 
 
 0.615
eutC
Ethanolamine ammonia-lyase, beta-subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Amino acids and amines; Belongs to the EutC family.
  
    0.593
eutB
Ethanolamine ammonia-lyase, alpha-subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Amino acids and amines.
  
    0.585
mtfA
Glucose-regulated peptidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biologicalprocesses : Control; Belongs to the MtfA family.
  
    0.500
dedA
Conserved inner membrane protein; Homologs of previously reported genes of unknown function; membrane component; Unknown function.
       0.480
PP_0544
Ethanolamine transporter; Function experimentally demonstrated in the studied genus; transporter; Transport and binding proteins.
  
    0.443
ppa
Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.
       0.406
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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