STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_0565Putative enzyme; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (177 aa)    
Predicted Functional Partners:
PP_0564
Homologs of previously reported genes of unknown function.
  
    0.920
yciH
Translation-related factor; Function of homologous gene experimentally demonstrated in an other organism; factor; Unknown function.
  
    0.706
speA
Biosynthetic arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.
 
     0.677
crtZ
Beta-carotene hydroxylase.
  
  
 0.597
nudF
ADP-ribose/sugar pyrophosphatase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Purines, pyrimidines, nucleosides, and nucleotides.
  
  
 0.596
nudL
Putative NUDIX hydrolase with low 3-phosphohydroxypyruvate phosphatase activity; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme; Biologicalprocesses : Maintain.
     
 0.590
PP_1348
Putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the Nudix hydrolase family.
     
 0.585
nudJ
MutT/nudix family protein; Belongs to the Nudix hydrolase family. NudJ subfamily.
      
 0.584
nudE
ADP-sugar pyrophosphorylase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Purines, pyrimidines, nucleosides, and nucleotides.
      
 0.577
nudC
NADH pyrophosphatase.
      
 0.574
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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