Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_0574DNA-binding response regulator, LuxR family. (258 aa)    
Predicted Functional Partners:
PP_3413
Sensor histidine kinase/response regulator.
 
 
 
 0.853
pfeS-II
Histidine kinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.783
PP_3484
Response regulator receiver protein.
  
   0.780
PP_2100
Two-component sensor protein; Function of homologous gene experimentally demonstrated in an other organism; receptor.
 
 
 
 0.779
pfeS-I
Histidine kinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 
 0.778
PP_1651
Two-component response regulator; Function of strongly homologous gene; regulator; Regulatory functions.
  
   0.776
PP_3833
Response regulator.
  
   0.775
PP_3454
Putative transcriptional regulatory protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Regulatory functions.
  
   0.774
kinB
Alginate biosynthesis sensor protein KinB.
 
 
 
 0.770
PP_0534
Putative Transcriptional regulator PfeR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
   0.770
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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