Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_0580MaoC domain protein. (283 aa)    
Predicted Functional Partners:
PP_0581
3-oxoacyl-(Acyl-carrier-protein) reductase.
 
 0.990
PP_0582
Thiolase family protein; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.934
PP_4552
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
 0.907
PP_1412
3-hydroxyisobutyryl-CoA hydrolase; Function of strongly homologous gene; enzyme.
  
 0.882
PP_4817
MaoC domain protein.
      
 0.862
cmoM
Putative Methyltransferase; Catalyzes the methylation of 5-carboxymethoxyuridine (cmo5U) to form 5-methoxycarbonylmethoxyuridine (mcmo5U) at position 34 in tRNAs; Belongs to the class I-like SAM-binding methyltransferase superfamily. CmoM family.
       0.775
PP_0577
Homologs of previously reported genes of unknown function.
       0.773
PP_0579
Homologs of previously reported genes of unknown function.
       0.773
PP_0576
Putative Lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.723
PP_3925
Homologs of previously reported genes of unknown function.
 
 
 0.718
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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