Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_0587Homologs of previously reported genes of unknown function. (128 aa)    
Predicted Functional Partners:
PP_0588
Putative copper-binding chaperone; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Biologicalprocesses : Circulate.
       0.746
cadA-II
Cadmium translocating P-type ATPase; Function experimentally demonstrated in the studied genus; transporter; Biologicalprocesses : Circulate.
       0.684
PP_0585
Putative metal-sensitive transcriptional regulator, MerR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Biologicalprocesses : Control.
       0.649
PP_5055
Sulfurtransferase.
      
 0.584
nuoB
NADH-quinone oxidoreductase subunit B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
      
 0.551
ydgK
Bcr/CflA family multidrug resistance transporter.
       0.538
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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