Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_0594Transcriptional regulator, TetR family. (247 aa)    
Predicted Functional Partners:
yigZ
Putative ribosome-binding factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Proteinsynthesis : Translation factors.
  
    0.870
yceG
Septation protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.
      
 0.851
PP_1964
Putative dGMP, dTMP, dhydroxyCMP kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
      
 0.819
PP_0595
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
 
   0.814
holB
DNA polymerase III subunit delta'.
      
 0.742
PP_4289
Homologs of previously reported genes of unknown function.
 
     0.555
xdhC
Xanthine dehydrogenase accessory factor; Function experimentally demonstrated in the studied species; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
 
     0.538
PP_0596
Omega-amino acid--pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.537
pydA
NADP-dependent dihydropyrimidine dehydrogenase subunit PreA; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Central intermediary metabolism.
 
     0.528
PP_0592
Oxidoreductase, short chain dehydrogenase/reductase family.
       0.505
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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