STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_0595Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (305 aa)    
Predicted Functional Partners:
PP_0596
Omega-amino acid--pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.840
PP_0594
Transcriptional regulator, TetR family.
 
 
   0.814
yigZ
Putative ribosome-binding factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Proteinsynthesis : Translation factors.
       0.773
PP_3121
Transcriptional regulator, LysR family; Function of homologous gene experimentally demonstrated in an other organism; regulator; Regulatoryfunctions : DNA interactions; Belongs to the LysR transcriptional regulatory family.
  
   
 0.718
PP_2695
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.642
PP_0079
Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.640
PP_3366
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.610
PP_4460
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.591
PP_3779
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.575
mmsA-I
Methylmalonate-semialdehyde dehydrogenase; Function of strongly homologous gene; enzyme.
 
     0.567
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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