Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PP_0598Paraquat-inducible protein A; Function of strongly homologous gene; cell process. (219 aa)    
Predicted Functional Partners:
PP_0599
Paraquat-inducible protein B; Function of strongly homologous gene; phenotype; Unknown function.
 
 
 0.973
PP_5745
Paraquat-inducible protein A; Function of strongly homologous gene; cell process.
 
    
0.890
PP_2577
Putative paraquat-inducible protein B (pqiB like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process; Cellularprocesses : Detoxification.
 
 
 0.888
PP_2578
Homologs of previously reported genes of unknown function.
 
  
 0.872
PP_4911
Homologs of previously reported genes of unknown function.
 
  
 0.698
lipB
Octanoyltransferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
   
    0.462
PP_3153
Homologs of previously reported genes of unknown function.
  
     0.452
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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