Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PP_0599Paraquat-inducible protein B; Function of strongly homologous gene; phenotype; Unknown function. (766 aa)    
Predicted Functional Partners:
PP_5745
Paraquat-inducible protein A; Function of strongly homologous gene; cell process.
 
 0.980
PP_0598
Paraquat-inducible protein A; Function of strongly homologous gene; cell process.
 
 
 0.973
PP_2578
Homologs of previously reported genes of unknown function.
 
   
 0.680
PP_4911
Homologs of previously reported genes of unknown function.
 
   
 0.648
PP_2852
Putative Sulfatase domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.513
PP_3145
Homologs of previously reported genes of unknown function.
 
    0.454
algX
Alginate biosynthesis protein AlgX; Plays two roles in the biosynthesis of the exopolysaccharide alginate: protects alginate from degradation as the polymer traverses the periplasm, and also plays a role in its O-acetylation. Probably has acetyltransferase activity in vivo (By similarity).
  
     0.414
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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