STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_0609Homologs of previously reported genes of unknown function. (214 aa)    
Predicted Functional Partners:
pilE
Type IV pili biogenesis protein PilE.
 
  
 0.970
PP_0608
Putative type 4 fimbrial biogenesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
  
 0.962
PP_0610
Homologs of previously reported genes of unknown function.
  
  
 0.956
PP_0607
Putative Type IV pili biogenesis protein FimT; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.833
thiO
FAD-dependent glycine/D-amino acid oxidase; Catalyzes the oxidation of glycine, leading to glyoxyl imine and hydrogen peroxide as primary products; glyoxyl imine is used for the biosynthesis of the thiazole ring of thiamine. Otherwise, glyoxyl imine is spontaneously hydrolyzed in water to produce glyoxylate and ammonia. Can also use sarcosine (N-methylglycine) as substrate, and, to a lesser extent, N-ethylglycine and D-proline. Has no activity towards other amino-acids D-Asp, D-Glu, D-Gln, D-His, D-Leu, D-Lys, D- ornithine, D-Trp, D-Val, L-Ala, L-Asp, L-Glu, L-His, L-Leu, L-Lys, L- Met [...]
       0.663
PP_5081
Type IV pili biogenesis protein.
  
  
 0.640
PP_5083
Putative Type IV pili biogenesis protein PilM; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.631
pilN
Type IV pili biogenesis protein PilN.
 
   
 0.629
PP_0788
Homologs of previously reported genes of unknown function; Unknown function.
 
     0.570
pilF
Type IV pili biogenesis protein PilF.
  
   
 0.491
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.