Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_0610Homologs of previously reported genes of unknown function. (154 aa)    
Predicted Functional Partners:
PP_0609
Homologs of previously reported genes of unknown function.
  
  
 0.982
PP_0608
Putative type 4 fimbrial biogenesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
  
 0.964
pilE
Type IV pili biogenesis protein PilE.
  
  
 0.963
PP_0607
Putative Type IV pili biogenesis protein FimT; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.889
thiO
FAD-dependent glycine/D-amino acid oxidase; Catalyzes the oxidation of glycine, leading to glyoxyl imine and hydrogen peroxide as primary products; glyoxyl imine is used for the biosynthesis of the thiazole ring of thiamine. Otherwise, glyoxyl imine is spontaneously hydrolyzed in water to produce glyoxylate and ammonia. Can also use sarcosine (N-methylglycine) as substrate, and, to a lesser extent, N-ethylglycine and D-proline. Has no activity towards other amino-acids D-Asp, D-Glu, D-Gln, D-His, D-Leu, D-Lys, D- ornithine, D-Trp, D-Val, L-Ala, L-Asp, L-Glu, L-His, L-Leu, L-Lys, L- Met [...]
       0.784
PP_5081
Type IV pili biogenesis protein.
  
  
 0.738
pilT
Twitching motility protein; Function experimentally demonstrated in the studied genus; cell process.
     
 0.434
pilN
Type IV pili biogenesis protein PilN.
  
  
 0.414
pilD
Leader peptidase/N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
     
 0.408
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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