STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Experiments
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[Homology]
Score
pilEType IV pili biogenesis protein PilE. (129 aa)    
Predicted Functional Partners:
PP_0609
Homologs of previously reported genes of unknown function.
 
  
 0.984
PP_0610
Homologs of previously reported genes of unknown function.
  
  
 0.963
PP_0608
Putative type 4 fimbrial biogenesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
  
 0.960
pilN
Type IV pili biogenesis protein PilN.
 
  
 0.937
PP_0607
Putative Type IV pili biogenesis protein FimT; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.913
thiO
FAD-dependent glycine/D-amino acid oxidase; Catalyzes the oxidation of glycine, leading to glyoxyl imine and hydrogen peroxide as primary products; glyoxyl imine is used for the biosynthesis of the thiazole ring of thiamine. Otherwise, glyoxyl imine is spontaneously hydrolyzed in water to produce glyoxylate and ammonia. Can also use sarcosine (N-methylglycine) as substrate, and, to a lesser extent, N-ethylglycine and D-proline. Has no activity towards other amino-acids D-Asp, D-Glu, D-Gln, D-His, D-Leu, D-Lys, D- ornithine, D-Trp, D-Val, L-Ala, L-Asp, L-Glu, L-His, L-Leu, L-Lys, L- Met [...]
 
    0.908
pilQ
Type 4 pili biogenesis protein; Function of strongly homologous gene; structure; Cell envelope.
 
   
 0.907
pilF
Type IV pili biogenesis protein PilF.
  
   
 0.894
pilT
Twitching motility protein; Function experimentally demonstrated in the studied genus; cell process.
 
   
 0.853
pilC
Type 4 fimbrial assembly protein PilC.
 
   
 0.803
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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