Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PP_0619Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein. (400 aa)    
Predicted Functional Partners:
PP_0616
Branched-chain amino acid ABC transporter, ATP binding protein.
 
  
 0.943
PP_0617
Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.943
PP_0618
Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.935
livK
Branched-chain amino acids ABC transporter - periplasmic leucine binding subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Pyruvate family.
     
  0.900
PP_2751
Homologs of previously reported genes of unknown function.
     
  0.900
PP_2752
Homologs of previously reported genes of unknown function.
     
  0.900
PP_2770
Homologs of previously reported genes of unknown function.
     
  0.900
PP_4867
Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like); Function of strongly homologous gene; transporter; Transport and binding proteins.
     
  0.900
PP_0615
Branched-chain amino acid ABC transporter, ATP-binding protein.
 
  
 0.883
PP_0620
GntR family transcriptional regulator.
 
    0.832
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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