STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_0629Homologs of previously reported genes of unknown function; Unknown function. (235 aa)    
Predicted Functional Partners:
PP_4260
Homologs of previously reported genes of unknown function.
  
     0.733
PP_4777
Homologs of previously reported genes of unknown function.
  
     0.644
PP_1867
Homologs of previously reported genes of unknown function.
  
    0.635
PP_4263
Putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component; Energy metabolism.
  
     0.578
PP_5099
Homologs of previously reported genes of unknown function.
  
     0.575
PP_5447
Homologs of previously reported genes of unknown function; Unknown function.
       0.549
ccoS
Cytochrome oxidase maturation protein, cbb3-type.
  
     0.544
PP_0628
Homologs of previously reported genes of unknown function.
  
    0.529
envZ
Osmolarity sensor protein EnvZ.
  
     0.517
PP_5267
Putative cytochrome c5; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier; Energy metabolism.
  
     0.510
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.