STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_0661Putative Transcriptional regulator AmpR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the LysR transcriptional regulatory family. (294 aa)    
Predicted Functional Partners:
cysB
Transcriptional dual regulator / CysB-O-acetyl-L-serine; Function of homologous gene experimentally demonstrated in an other organism; regulator; Aminoacidbiosynthesis : Serine family; Belongs to the LysR transcriptional regulatory family.
  
   
 0.836
PP_4464
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.737
PP_2041
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.719
PP_3934
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.717
PP_4467
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.717
PP_2695
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.706
PP_0663
Transcriptional regulator, AsnC family.
  
    0.698
PP_4460
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.696
PP_0662
Putative Threonine synthase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.693
PP_1861
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.678
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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