STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_0666Homologs of previously reported genes of unknown function. (120 aa)    
Predicted Functional Partners:
PP_0665
Putative glyceraldehyde-3-phosphate dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Energymetabolism : Entner-Doudoroff.
  
   0.746
PP_0664
Homoserine dehydrogenase; Function of strongly homologous gene; enzyme; Amino acid biosynthesis.
       0.708
dadA-I
D-amino acid dehydrogenase 1 small subunit; Oxidative deamination of D-amino acids.
 
  
 0.531
dadA-II
D-amino-acid:quinone oxidoreductase (deaminating); Oxidative deamination of D-amino acids; Belongs to the DadA oxidoreductase family.
 
  
 0.531
PP_5609
Homologs of previously reported genes of unknown function.
  
     0.503
PP_4311
Putative D-amino acid dehydrogenase 2 small subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Energymetabolism : Amino acids and amines.
 
  
 0.477
ooxA
Opine oxidase subunit A; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Amino acids and amines.
 
    0.473
PP_0667
RNA polymerase sigma-70 factor, ECF subfamily.
       0.465
ooxB
Opine oxidase subunit B; Function of strongly homologous gene; enzyme; Energymetabolism : Amino acids and amines.
 
  
 0.462
PP_0668
Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.461
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.