STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_0669Outer membrane ferric siderophore receptor. (810 aa)    
Predicted Functional Partners:
PP_0668
Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   0.883
PP_3085
Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   0.846
PP_0161
Putative transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
   0.833
PP_3576
Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   0.833
PP_0667
RNA polymerase sigma-70 factor, ECF subfamily.
 
    0.766
PP_0866
Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.764
PP_4610
Conserved protein of unknown function containing PepSY-associated TM helix domain; Homologs of previously reported genes of unknown function; Unknown function.
 
    0.754
PP_4612
Putative FecR protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   0.751
PP_3555
Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.728
PP_0703
Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   0.724
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.