STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_0679Homologs of previously reported genes of unknown function. (171 aa)    
Predicted Functional Partners:
PP_0678
Homologs of previously reported genes of unknown function; Unknown function.
 
     0.945
PP_1500
Putative Lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.735
PP_0149
Homologs of previously reported genes of unknown function.
  
     0.626
PP_2374
Homologs of previously reported genes of unknown function.
  
     0.610
PP_1504
Homologs of previously reported genes of unknown function.
  
    0.580
algX
Alginate biosynthesis protein AlgX; Plays two roles in the biosynthesis of the exopolysaccharide alginate: protects alginate from degradation as the polymer traverses the periplasm, and also plays a role in its O-acetylation. Probably has acetyltransferase activity in vivo (By similarity).
  
     0.558
PP_0676
Putative Transcription elongation factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.551
algK
Alginate biosynthesis protein AlgK; May be involved in the polymerization of mannuronate to alginate.
  
     0.525
PP_0680
ATP-dependent protease-like protein.
  
    0.510
PP_0790
Inner membrane protein AmpE.
  
     0.498
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.