Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_0681Homologs of previously reported genes of unknown function. (112 aa)    
Predicted Functional Partners:
PP_5496
Homologs of previously reported genes of unknown function.
      
 0.941
PP_0788
Homologs of previously reported genes of unknown function; Unknown function.
      
 0.931
PP_5586
Exported protein of unknown function; No homology to any previously reported sequences; Unknown function.
      
 0.913
cyaA
Adenylate cyclase; Function experimentally demonstrated in the studied strain; enzyme.
      
 0.742
PP_0680
ATP-dependent protease-like protein.
       0.714
PP_0682
Conserved inner membrane protein of unknown function, UPF0114 family; Homologs of previously reported genes of unknown function; Unknown function.
       0.705
fklB-I
FKBP-type peptidyl-prolyl cis-trans isomerase; Function of strongly homologous gene; enzyme; Proteinfate : Protein folding and stabilization.
       0.548
PP_0683
Homologs of previously reported genes of unknown function.
       0.463
fleS
Sensory box histidine kinase FleS.
      
 0.421
fleQ
Transcriptional regulator FleQ.
      
 0.400
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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