STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_0682Conserved inner membrane protein of unknown function, UPF0114 family; Homologs of previously reported genes of unknown function; Unknown function. (162 aa)    
Predicted Functional Partners:
PP_0681
Homologs of previously reported genes of unknown function.
       0.705
fklB-I
FKBP-type peptidyl-prolyl cis-trans isomerase; Function of strongly homologous gene; enzyme; Proteinfate : Protein folding and stabilization.
       0.683
PP_0683
Homologs of previously reported genes of unknown function.
  
    0.642
PP_0680
ATP-dependent protease-like protein.
       0.625
PP_0897
Fumarate hydratase, class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
       0.481
PP_2732
Homologs of previously reported genes of unknown function.
       0.461
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.