Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_0696Homologs of previously reported genes of unknown function. (291 aa)    
Predicted Functional Partners:
rimI
ribosomal-protein-S18-alanine N-acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.
  
    0.884
PP_5455
Homologs of previously reported genes of unknown function; Unknown function.
       0.596
PP_2305
Homologs of previously reported genes of unknown function.
     
 0.592
PP_0678
Homologs of previously reported genes of unknown function; Unknown function.
      
 0.583
PP_0694
Homologs of previously reported genes of unknown function.
       0.581
PP_0695
Homologs of previously reported genes of unknown function.
       0.581
PP_0693
Homologs of previously reported genes of unknown function.
     
 0.579
PP_1451
Homologs of previously reported genes of unknown function.
     
 0.578
PP_1897
DNA internalization-related competence protein ComEC/Rec2.
     
 0.578
PP_2673
Pentapeptide repeat family protein.
      
 0.556
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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