STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ycaC-IPutative hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Biologicalprocesses : Manage energy. (206 aa)    
Predicted Functional Partners:
ppkB
Polyphosphate kinase 2; Function experimentally demonstrated in the studied genus; enzyme; Centralintermediarymetabolism : Phosphorus compounds.
  
    0.524
PP_0710
Homologs of previously reported genes of unknown function; Unknown function.
       0.493
PP_5252
Homologs of previously reported genes of unknown function.
 
     0.489
PP_1198
Transcriptional regulator, Cro/CI family (higA antitoxin like); Function of strongly homologous gene; regulator; Cellularprocesses : Toxin production and resistance.
   
    0.449
kefB-I
Kef-type potassium/proton antiporter, CPA2 family; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transportandbindingproteins : Cations and iron carrying compounds; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
    0.448
osmC
Stress-induced peroxiredoxin, lipoyl-dependent peroxidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Cellularprocesses : Adaptations to atypical conditions.
   
    0.421
PP_1644
NAD(P)H dehydrogenase (quinone); Belongs to the WrbA family.
   
    0.418
PP_0085
Homologs of previously reported genes of unknown function.
   
  
 0.411
ygaU
Regulator of murein cross-linking; Function of homologous gene experimentally demonstrated in an other organism; regulator; Unknown function.
   
    0.407
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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