STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_0714Transporter, PerM family. (365 aa)    
Predicted Functional Partners:
PP_0716
HlyD family secretion protein.
 
    0.905
PP_0715
Outer membrane efflux protein.
 
    0.866
PP_0717
Conserved membrane protein of unknown function, DUF2955 family; Homologs of previously reported genes of unknown function; Unknown function.
  
  
 0.813
kefB-I
Kef-type potassium/proton antiporter, CPA2 family; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transportandbindingproteins : Cations and iron carrying compounds; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
    0.651
PP_3517
Homologs of previously reported genes of unknown function.
  
 
   0.646
ppkB
Polyphosphate kinase 2; Function experimentally demonstrated in the studied genus; enzyme; Centralintermediarymetabolism : Phosphorus compounds.
 
    0.628
gltS
Glutamate:sodium symporter; Catalyzes the sodium-dependent transport of glutamate. Belongs to the glutamate:Na(+) symporter (ESS) (TC 2.A.27) family.
  
    0.499
PP_3518
Homologs of previously reported genes of unknown function.
 
     0.461
PP_2741
Homologs of previously reported genes of unknown function.
 
    0.433
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.