Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_0756Homologs of previously reported genes of unknown function. (423 aa)    
Predicted Functional Partners:
dapD
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA.
  
  
 0.662
PP_0759
Homologs of previously reported genes of unknown function.
  
    0.654
PP_0757
Homologs of previously reported genes of unknown function.
       0.642
PP_2166
Anti-anti-sigma factor.
  
     0.622
PP_5457
Homologs of previously reported genes of unknown function.
       0.606
PP_0758
Homologs of previously reported genes of unknown function; Belongs to the SOS response-associated peptidase family.
       0.579
PP_4833
SURF1 domain protein.
      
 0.555
mgtC
Magnesium transporter, MgtC family.
      
 0.547
algQ
Transcriptional regulatory protein AlgQ; Belongs to the Rsd/AlgQ family.
  
   
 0.544
PP_0097
Homologs of previously reported genes of unknown function.
  
     0.539
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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