STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chpBmRNA interferase; Function of homologous gene experimentally demonstrated in an other organism; factor; Regulatory functions. (115 aa)    
Predicted Functional Partners:
PP_0770
PemI-like protein.
 
 
 0.995
mqsR
Motility quorum-sensing regulator / GCU-specific mRNA interferase toxin; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transcription : Degradation of RNA.
   
  
 0.858
nikR
Nickel-responsive regulator; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.
  
 
 0.857
hicB
HicB protein.
  
  
 0.851
mqsA
Antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor; Function of homologous gene experimentally demonstrated in an other organism; regulator; Regulatory functions.
     
 0.834
yoeB
Toxin of the YefM-YoeB antitoxin/toxin complex and DNA-binding transcriptional repressor; Function of homologous gene experimentally demonstrated in an other organism; factor; Cellularprocesses : Toxin production and resistance.
  
   
 0.830
yefM
Antitoxin of the YoeB-YefM toxin-antitoxin pair and DNA binding transcriptional repressor; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
   
 0.785
PP_0772
Metallo-beta-lactamase family protein.
  
    0.726
PP_1480
Homologs of previously reported genes of unknown function.
  
   
 0.556
PP_0502
Homologs of previously reported genes of unknown function.
   
    0.525
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.