STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yiaDOmpA/MotB domain-containing protein. (236 aa)    
Predicted Functional Partners:
csgF
Curli secretion and assembly outer membrane associated component; Function of homologous gene experimentally demonstrated in an other organism; putative membrane component; Transport and binding proteins.
      
 0.837
colR
DNA-binding response regulator; Function of strongly homologous gene; regulator; Regulatory functions.
   
  
 0.650
oprQ
Outer-membrane porin D; Function experimentally demonstrated in the studied genus; transporter; Transportandbindingproteins : Porins.
      
 0.642
tolB
Component of the Tol biopolymer transport system; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.604
PP_0772
Metallo-beta-lactamase family protein.
     
 0.579
PP_0770
PemI-like protein.
       0.472
chpB
mRNA interferase; Function of homologous gene experimentally demonstrated in an other organism; factor; Regulatory functions.
       0.472
PP_1600
Skp-like protein.
 
 
 0.467
fliD
Flagellar filament capping protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
   
  
 0.448
mltD
Membrane-bound lytic murein transglycosylase D.
 
 
 0.425
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.