STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
yiaDOmpA/MotB domain-containing protein. (236 aa)    
Predicted Functional Partners:
csgF
Curli secretion and assembly outer membrane associated component; Function of homologous gene experimentally demonstrated in an other organism; putative membrane component; Transport and binding proteins.
      
 0.864
PP_0772
Metallo-beta-lactamase family protein.
       0.735
slyB
Outer membrane lipoprotein; Function of homologous gene experimentally demonstrated in an other organism; lipoprotein; Cellenvelope : Surface structures.
  
  
 0.691
oprQ
Outer-membrane porin D; Function experimentally demonstrated in the studied genus; transporter; Transportandbindingproteins : Porins.
      
 0.653
colR
DNA-binding response regulator; Function of strongly homologous gene; regulator; Regulatory functions.
   
  
 0.643
tolB
Component of the Tol biopolymer transport system; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.639
PP_1600
Skp-like protein.
 
 
 0.512
ftsB
Essential cell division protein; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.
      
 0.510
PP_4959
Diguanylate cyclase; Function of strongly homologous gene; enzyme.
       0.488
lolA
Outer-membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
 
 0.476
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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