Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_0790Inner membrane protein AmpE. (276 aa)    
Predicted Functional Partners:
ampD
N-acetyl-anhydromuramyl-L-alanine-amidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Regulatory functions.
  
  
 0.920
nadC
Quinolinate phosphoribosyltransferase (decarboxylating) monomer; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biosynthesisofcofactors,prostheticgroups,andcarriers : Pyridine nucleotides; Belongs to the NadC/ModD family.
     
 0.828
PP_0788
Homologs of previously reported genes of unknown function; Unknown function.
 
     0.795
PP_1666
Homologs of previously reported genes of unknown function.
  
     0.734
PP_1325
Putative lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; lipoprotein.
  
     0.682
PP_0149
Homologs of previously reported genes of unknown function.
  
     0.658
PP_0938
Homologs of previously reported genes of unknown function.
  
     0.656
algK
Alginate biosynthesis protein AlgK; May be involved in the polymerization of mannuronate to alginate.
  
     0.619
PP_4143
Homologs of previously reported genes of unknown function.
  
     0.618
ccoQ-II
Cytochrome c oxidase subunit, cbb3-type; Function of strongly homologous gene; enzyme.
  
     0.599
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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