STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycfJPutative regulator of flagellation; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Unknown function. (180 aa)    
Predicted Functional Partners:
mucA
Sigma factor AlgU negative regulatory protein.
  
    0.722
secF
Sec translocation complex subunit SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
       0.579
secD
Sec Translocation Complex SecD subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
       0.571
PP_0255
Homologs of previously reported genes of unknown function.
   
  
 0.506
yhjG
Uncharacterized protein YhjG; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
 
     0.486
PP_1183
Putative Siderophore biosynthesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the P-Pant transferase superfamily.
  
    0.483
yajC
Sec translocation complex subunit YajC; The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase/insertase is a supercomplex required for protein secretion, insertion of proteins into membranes, and assembly of membrane protein complexes. While the SecYEG complex is essential for assembly of a number of proteins and complexes, the SecDF-YajC-YidC subcomplex facilitates these functions.
       0.481
nudJ
MutT/nudix family protein; Belongs to the Nudix hydrolase family. NudJ subfamily.
  
   
 0.452
PP_5007
Polyhydroxyalkanoate granule-associated protein GA2.
  
    0.446
PP_1161
Putative Lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the UPF0149 family.
  
     0.445
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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