STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_0870Putative Glycine betaine/carnitine/choline ABC transporter, periplasmic binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (313 aa)    
Predicted Functional Partners:
yehX
ABC transporter ATP-binding subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 0.999
yehW
Osmoprotectant ABC transporter permease subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins.
 
 0.999
PP_0871
Putative Glycine betaine/carnitine/choline ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 0.999
PP_3559
Glycine betaine ABC transporter (permease); Function of strongly homologous gene; transporter; Transportandbindingproteins : Amino acids, peptides and amines.
 
 
 0.957
cbcW
Choline / betaine / carnitine ABC transporter - membrane subunit; Function experimentally demonstrated in the studied genus; transporter.
 
 
 0.612
PP_0255
Homologs of previously reported genes of unknown function.
  
    0.508
PP_0797
Homologs of previously reported genes of unknown function.
  
    0.508
PP_2722
Homologs of previously reported genes of unknown function.
  
    0.508
prfC
Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.
     
 0.505
opuA
Glycine betaine ABC transporter, ATPase/permease fusion protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transportandbindingproteins : Amino acids, peptides and amines.
 
  
 0.505
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.