Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
potF-IPutrescine-binding periplasmic protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transportandbindingproteins : Amino acids, peptides and amines. (359 aa)    
Predicted Functional Partners:
spuH
Spermidine/putrescine ABC transporter - permease subunit; Function experimentally demonstrated in the studied genus; transporter; Centralintermediarymetabolism : Polyamine biosynthesis.
 0.998
spuF
Spermidine/putrescine ABC transporter - ATP binding subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 0.974
spuG
Spermidine/putrescine ABC transporter - inner membrane subunit; Function experimentally demonstrated in the studied genus; transporter; Centralintermediarymetabolism : Polyamine biosynthesis.
 
 0.973
PP_0414
Polyamine ABC transporter, permease protein.
 
 0.969
PP_3816
Polyamine ABC transporter, permease protein.
 
 0.884
ydcV
Polyamine ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.
 
 0.878
PP_3815
Polyamine ABC transporter, permease protein.
 
  
 0.836
PP_5273
Putative Oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.802
PP_3146
Putative Oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.801
PP_4548
Putative Oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.799
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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