STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dppBDipeptide ABC transporter - putative membrane subunit; Function experimentally demonstrated in the studied genus; transporter; Transportandbindingproteins : Amino acids, peptides and amines. (336 aa)    
Predicted Functional Partners:
dppD
Dipeptide ABC transporter - putative ATP binding subunit; Function experimentally demonstrated in the studied genus; transporter; Energymetabolism : Amino acids and amines; Belongs to the ABC transporter superfamily.
 0.999
dppC
Dipeptide ABC transporter - putative membrane subunit; Function experimentally demonstrated in the studied genus; transporter; Transportandbindingproteins : Amino acids, peptides and amines.
 
 0.999
dppF
Dipeptide ABC transporter, binding subunit; Function experimentally demonstrated in the studied genus; transporter; Energymetabolism : Amino acids and amines; Belongs to the ABC transporter superfamily.
 0.997
dppA-I
Dipeptide ABC transporter - periplasmic binding protein; Function experimentally demonstrated in the studied genus; transporter; Energymetabolism : Amino acids and amines.
 0.996
dppA-II
Dipeptide ABC transporter - periplasmic binding protein; Function experimentally demonstrated in the studied genus; transporter; Energymetabolism : Amino acids and amines.
 0.995
dppA-III
Dipeptide ABC transporter - periplasmic binding protein; Function experimentally demonstrated in the studied genus; transporter; Energymetabolism : Amino acids and amines.
 0.992
nikC
Nickel ABC transporter permease subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transportandbindingproteins : Cations and iron carrying compounds.
  
 0.927
PP_3221
ABC transporter, permease protein.
  
 0.912
PP_4454
Putative Opine ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 0.902
nikA
Nickel ABC transporter periplasmic binding protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transportandbindingproteins : Cations and iron carrying compounds.
 
 0.896
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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