Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dppA-IIDipeptide ABC transporter - periplasmic binding protein; Function experimentally demonstrated in the studied genus; transporter; Energymetabolism : Amino acids and amines. (530 aa)    
Predicted Functional Partners:
dppB
Dipeptide ABC transporter - putative membrane subunit; Function experimentally demonstrated in the studied genus; transporter; Transportandbindingproteins : Amino acids, peptides and amines.
 0.996
dppD
Dipeptide ABC transporter - putative ATP binding subunit; Function experimentally demonstrated in the studied genus; transporter; Energymetabolism : Amino acids and amines; Belongs to the ABC transporter superfamily.
 
 0.994
dppC
Dipeptide ABC transporter - putative membrane subunit; Function experimentally demonstrated in the studied genus; transporter; Transportandbindingproteins : Amino acids, peptides and amines.
 
 0.984
dppF
Dipeptide ABC transporter, binding subunit; Function experimentally demonstrated in the studied genus; transporter; Energymetabolism : Amino acids and amines; Belongs to the ABC transporter superfamily.
 
 0.981
hisQ
Histidine / lysine / arginine / ornithine ABC transporter - permease subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Aspartate family.
     
 0.876
gltJ
Glutamate / aspartate ABC transporter - permease subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Aspartate family.
     
 0.841
opdP
Glycine-glutamate dipeptide porin; Function experimentally demonstrated in the studied genus; transporter; Transportandbindingproteins : Porins.
     
 0.828
aroP-II
Aromatic amino acid transport protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Aromatic amino acid family.
      
 0.810
gsiC
Glutathione ABC transporter permease subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins.
 
 0.798
nikC
Nickel ABC transporter permease subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transportandbindingproteins : Cations and iron carrying compounds.
 
 
 0.766
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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