STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_0887Sensor histidine kinase. (450 aa)    
Predicted Functional Partners:
regA
Photosynthetic apparatus regulatory protein RegA.
 0.999
PP_0886
Homologs of previously reported genes of unknown function.
       0.651
PP_1600
Skp-like protein.
  
     0.624
PP_0889
Homologs of previously reported genes of unknown function.
       0.610
PP_0890
Homologs of previously reported genes of unknown function.
       0.610
PP_0892
Phospholipase family protein.
 
 
   0.586
PP_2354
Sensory box histidine kinase/response regulator.
 
 
 
 0.555
PP_0891
Homologs of previously reported genes of unknown function; Belongs to the UPF0312 family.
  
    0.516
PP_3761
Sensor histidine kinase/response regulator.
  
 
 0.503
oprP
Porin P; Function experimentally demonstrated in the studied genus; transporter; Biologicalprocesses : Circulate.
  
     0.490
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.