STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
regAPhotosynthetic apparatus regulatory protein RegA. (186 aa)    
Predicted Functional Partners:
PP_0887
Sensor histidine kinase.
 0.999
dsbA
Thiol:disulfide interchange protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Proteinfate : Protein folding and stabilization.
      
 0.851
PP_1562
Putative Phage terminase, small subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.819
PP_3882
Putative Phage terminase, small subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.819
bvgA
Putative Virulence factors positive transcription regulator BvgA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.813
evgA
DNA-binding response regulator in two-component regulatory system with EvgS; Function of homologous gene experimentally demonstrated in an other organism; regulator.
      
 0.783
prpF
Aconitate isomerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energy metabolism.
      
 0.634
PP_0886
Homologs of previously reported genes of unknown function.
       0.625
PP_0889
Homologs of previously reported genes of unknown function.
       0.610
PP_0890
Homologs of previously reported genes of unknown function.
       0.610
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.