STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_0891Homologs of previously reported genes of unknown function; Belongs to the UPF0312 family. (193 aa)    
Predicted Functional Partners:
PP_0892
Phospholipase family protein.
       0.869
PP_0893
ThiJ/PfpI family protein.
  
    0.645
PP_0889
Homologs of previously reported genes of unknown function.
       0.628
PP_0890
Homologs of previously reported genes of unknown function.
       0.628
PP_0887
Sensor histidine kinase.
  
    0.516
PP_4913
Homologs of previously reported genes of unknown function.
  
    0.515
regA
Photosynthetic apparatus regulatory protein RegA.
       0.502
yceJ
Putative cytochrome b561, iron-regulated; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier; Energymetabolism : Electron transport.
 
  
 0.488
PP_2957
Acetyltransferase, GNAT family.
  
    0.462
PP_2027
Homologs of previously reported genes of unknown function.
  
     0.431
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.