Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
colRDNA-binding response regulator; Function of strongly homologous gene; regulator; Regulatory functions. (227 aa)    
Predicted Functional Partners:
colS
Integral membrane sensor signal transduction histidine kinase; Function of strongly homologous gene; regulator; Signal transduction.
 
 
 0.999
PP_0903
Homologs of previously reported genes of unknown function.
     
 0.930
PP_0900
PAP2 family protein.
 
   
 0.919
phoQ
Sensor protein; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transcription.
 
 
 0.910
PP_0904
InaA protein.
     
 0.900
PP_0905
Homologs of previously reported genes of unknown function.
     
 0.833
PP_1437
Heavy metal sensor histidine kinase; Member of a two-component regulatory system.
 
 0.829
czrSA
Metal-sensor histidine kinase; Member of a two-component regulatory system.
 
 0.820
copS
Copper sensor protein; Member of a two-component regulatory system.
 
 0.815
pagL-I
Lipid A 3-O-deacylase; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family.
      
 0.814
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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