Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
colSIntegral membrane sensor signal transduction histidine kinase; Function of strongly homologous gene; regulator; Signal transduction. (436 aa)    
Predicted Functional Partners:
colR
DNA-binding response regulator; Function of strongly homologous gene; regulator; Regulatory functions.
 
 
 0.999
phoP
Two component system DNA-binding transcriptional dual regulator; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transcription.
 
 
 0.933
PP_0903
Homologs of previously reported genes of unknown function.
 
   
 0.932
PP_0900
PAP2 family protein.
 
   
 0.929
PP_5152
Homologs of previously reported genes of unknown function.
  
   
 0.891
PP_0904
InaA protein.
   
 0.877
PP_0905
Homologs of previously reported genes of unknown function.
     
 0.851
ompR
Two-component system DNA-binding response transcriptional dual regulator; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transcription.
 
 
 0.842
pagL-I
Lipid A 3-O-deacylase; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family.
  
   
 0.836
PP_3484
Response regulator receiver protein.
  
   0.804
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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