STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
colSIntegral membrane sensor signal transduction histidine kinase; Function of strongly homologous gene; regulator; Signal transduction. (436 aa)    
Predicted Functional Partners:
colR
DNA-binding response regulator; Function of strongly homologous gene; regulator; Regulatory functions.
 
 
 0.997
PP_0903
Homologs of previously reported genes of unknown function.
 
   
 0.923
PP_0900
PAP2 family protein.
 
   
 0.921
phoP
Two component system DNA-binding transcriptional dual regulator; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transcription.
 
 
 0.916
PP_5152
Homologs of previously reported genes of unknown function.
  
   
 0.880
PP_0904
InaA protein.
   
 0.866
ompR
Two-component system DNA-binding response transcriptional dual regulator; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transcription.
 
 
 0.840
PP_0905
Homologs of previously reported genes of unknown function.
     
 0.835
pagL-I
Lipid A 3-O-deacylase; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family.
  
   
 0.822
PP_3484
Response regulator receiver protein.
  
   0.818
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.