Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_0905Homologs of previously reported genes of unknown function. (77 aa)    
Predicted Functional Partners:
PP_0903
Homologs of previously reported genes of unknown function.
     
 0.981
PP_0904
InaA protein.
     
 0.981
PP_0033
Putative undecaprenyl-glycosyl transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
      
 0.863
PP_0035
Putative bactoprenol-linked glycose transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
      
 0.860
colS
Integral membrane sensor signal transduction histidine kinase; Function of strongly homologous gene; regulator; Signal transduction.
     
 0.851
colR
DNA-binding response regulator; Function of strongly homologous gene; regulator; Regulatory functions.
     
 0.833
pagL-I
Lipid A 3-O-deacylase; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family.
      
 0.820
yijP
Putative phosphoethanolamine transferase CptA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
      
 0.820
PP_0900
PAP2 family protein.
     
 0.757
PP_5152
Homologs of previously reported genes of unknown function.
      
 0.711
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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