STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_0908Homologs of previously reported genes of unknown function. (365 aa)    
Predicted Functional Partners:
PP_0909
Homologs of previously reported genes of unknown function.
 
  
 0.991
PP_0910
Homologs of previously reported genes of unknown function.
 
  
 0.990
PP_0913
Homologs of previously reported genes of unknown function.
 
    0.928
PP_0906
Putative Multidrug efflux RND transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
     
 0.613
PP_0907
RND efflux membrane fusion protein-related protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.506
ctpH
Methyl-accepting chemotaxis protein CtpH.
       0.488
PP_0911
Homologs of previously reported genes of unknown function.
       0.485
PP_0912
Homologs of previously reported genes of unknown function.
       0.473
algX
Alginate biosynthesis protein AlgX; Plays two roles in the biosynthesis of the exopolysaccharide alginate: protects alginate from degradation as the polymer traverses the periplasm, and also plays a role in its O-acetylation. Probably has acetyltransferase activity in vivo (By similarity).
  
     0.434
alg8
Glycosyltransferase alg8; Possibly a processive enzyme that polymerizes GDP-mannuronic acid.
  
    0.434
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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