Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_0910Homologs of previously reported genes of unknown function. (475 aa)    
Predicted Functional Partners:
PP_0909
Homologs of previously reported genes of unknown function.
 
  
 0.991
PP_0908
Homologs of previously reported genes of unknown function.
 
  
 0.990
PP_0913
Homologs of previously reported genes of unknown function.
    0.982
PP_2150
Putative Thiamine biosynthesis lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
  
    0.569
PP_0906
Putative Multidrug efflux RND transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.546
PP_0907
RND efflux membrane fusion protein-related protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.543
fbpA
Putative iron(III)|iron ABC transporter, periplasmic iron-binding protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transportandbindingproteins : Cations and iron carrying compounds.
 
    0.527
PP_0911
Homologs of previously reported genes of unknown function.
       0.516
PP_0912
Homologs of previously reported genes of unknown function.
       0.503
PP_0914
GGDEF domain protein.
       0.476
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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