STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_0913Homologs of previously reported genes of unknown function. (443 aa)    
Predicted Functional Partners:
PP_0910
Homologs of previously reported genes of unknown function.
    0.982
PP_0909
Homologs of previously reported genes of unknown function.
 
    0.959
PP_0908
Homologs of previously reported genes of unknown function.
 
    0.928
fbpA
Putative iron(III)|iron ABC transporter, periplasmic iron-binding protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transportandbindingproteins : Cations and iron carrying compounds.
  
    0.751
PP_0914
GGDEF domain protein.
  
    0.719
PP_1083
(2Fe-2S)-binding protein.
  
    0.696
PP_4881
Putative Iron ABC transporter, periplasmic iron-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.667
PP_0912
Homologs of previously reported genes of unknown function.
       0.658
PP_0911
Homologs of previously reported genes of unknown function.
       0.640
PP_3326
Homologs of previously reported genes of unknown function.
   
    0.618
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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